Запрос SQL Server приводит к ошибке «Неверный синтаксис рядом с ключевым словом« GROUP »» - PullRequest
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Запрос SQL Server приводит к ошибке «Неверный синтаксис рядом с ключевым словом« GROUP »»

0 голосов
/ 17 мая 2018

Я пишу запрос SQL, но получаю синтаксическую ошибку:

Неверный синтаксис рядом с ключевым словом 'GROUP'

Что может быть причиной этой проблемы?Я пытался найти все очевидные вещи, но я не понимаю, и я посмотрел на предыдущие сообщения, см. Запрос ниже: 

(/****** Script for SelectTopNRows command from SSMS  ******/
SELECT ALLGENEDX.[id]
      ,ALLGENEDX.[Chr]
      ,ALLGENEDX.[Start]
      ,ALLGENEDX.[End]
      ,ALLGENEDX.[ref]
      ,ALLGENEDX.[alt]
      ,ALLGENEDX.[Func#refGene]
      ,ALLGENEDX.[Gene#refGene]
      ,ALLGENEDX.[Otherinfo]
      ,CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN PARENT_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN PARENT_OTHERINFO <> 'HOM' AND PARENT_AMMOUNT > 1 THEN 1 ELSE 0 END END AS 'PARENT_INFO'
      ,CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN SIBLING_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN SIBLING_OTHERINFO <> 'HOM' AND (SIBLING_AMMOUNT = 1 OR SIBLING_AMMOUNT IS NULL) THEN 1 ELSE 2 END END AS 'SIBLING_INFO' 
      FROM [Exome Data].[dbo].[ALLGENEDX],
(SELECT [ID],
[Chr],
[Start],
[end],
[REF], 
[ALT],
[Func#refGene],
[GENE#REFGENE],
[OTHERINFO] AS PARENT_OTHERINFO, 
COUNT (ID) OVER (PARTITION BY 
[Chr],
[Start],
[End],
[REF], 
[ALT],
[Func#refGene],
[GENE#REFGENE],
[OTHERINFO]) AS PARENT_AMMOUNT 
FROM [Exome Data].DBO.ALLGENEDX 
WHERE ID IN ('1646304GD', '1646307GD'))AS PARENT, 
(SELECT [id],
[Chr],
[Start],
[end],
[REF], 
[ALT],
[Func#refGene],
[GENE#REFGENE],
[OTHERINFO] AS SIBLING_OTHERINFO, 
COUNT (ID) OVER (PARTITION BY
[Chr],
[Start],
[end],
[REF], 
[ALT],
[Func#refGene],
[GENE#REFGENE],
[OTHERINFO]) AS SIBLING_AMMOUNT 
FROM [Exome Data].DBO.ALLGENEDX 
WHERE ID IN ('1646310GD', '1646314GD', '1646317GD', '1646320GD', '1646325GD'))AS SIBLING
   WHERE SIBLING.[CHR]=ALLGENEDX.Chr
  AND SIBLING.[START]=ALLGENEDX.[START]
  AND SIBLING.[END]=ALLGENEDX.[END]
  AND SIBLING.[REF]=ALLGENEDX.[REF]
  AND SIBLING.[ALT]= ALLGENEDX.[ALT] 
  AND SIBLING.[GENE#REFGENE]=ALLGENEDX.[GENE#REFGENE]
  AND PARENT.[CHR]=ALLGENEDX.[Chr]
  AND PARENT.[START]=ALLGENEDX.[START]
  AND PARENT.[END]=ALLGENEDX.[END]
  AND PARENT.[REF]=ALLGENEDX.[REF]
  AND PARENT.[ALT]= ALLGENEDX.[ALT] 
  AND PARENT.[GENE#REFGENE]=ALLGENEDX.[GENE#REFGENE]
  AND  ALLGENEDX.ID= '1646299GD' AND ALLGENEDX.Func#refGene = 'exonic' 
  AND (EXAC_FREQ<'0.005' OR EXAC_FREQ IS NULL)
  AND ([1000G_ALL]<'0.005' OR [1000G_ALL] IS NULL)
  AND (GNOMAD_EXOME_ALL<'0.005' OR GNOMAD_EXOME_ALL IS NULL)
  HAVING CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN PARENT_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN PARENT_OTHERINFO <> 'HOM' AND PARENT_AMMOUNT > 1 THEN 1 ELSE 0 END END > 0
  OR CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN SIBLING_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN SIBLING_OTHERINFO <> 'HOM' AND (SIBLING_AMMOUNT = 1 OR SIBLING_AMMOUNT IS NULL) THEN 1 ELSE 2 END END > 0
  GROUP BY ALLGENEDX.[id]
      ,ALLGENEDX.[Chr]
      ,ALLGENEDX.[Start]
      ,ALLGENEDX.[End]
      ,ALLGENEDX.[ref]
      ,ALLGENEDX.[alt]
      ,ALLGENEDX.[Func#refGene]
      ,ALLGENEDX.[Gene#refGene]
      ,ALLGENEDX.[Otherinfo]
      ,[PARENT_OTHERINFO]
      ,[SIBLING_OTHERINFO]
     ORDER BY len ALLGENEDX.[Chr], Chr, start;/****** Script for SelectTopNRows command from SSMS  ******/
SELECT ALLGENEDX.[id]
      ,ALLGENEDX.[Chr]
      ,ALLGENEDX.[Start]
      ,ALLGENEDX.[End]
      ,ALLGENEDX.[ref]
      ,ALLGENEDX.[alt]
      ,ALLGENEDX.[Func#refGene]
      ,ALLGENEDX.[Gene#refGene]
      ,ALLGENEDX.[Otherinfo]
      ,CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN PARENT_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN PARENT_OTHERINFO <> 'HOM' AND PARENT_AMMOUNT > 1 THEN 1 ELSE 0 END END AS 'PARENT_INFO'
      ,CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN SIBLING_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN SIBLING_OTHERINFO <> 'HOM' AND (SIBLING_AMMOUNT = 1 OR SIBLING_AMMOUNT IS NULL) THEN 1 ELSE 2 END END AS 'SIBLING_INFO' 
      FROM [Exome Data].[dbo].[ALLGENEDX],
(SELECT [ID],
[Chr],
[Start],
[end],
[REF], 
[ALT],
[Func#refGene],
[GENE#REFGENE],
[OTHERINFO] AS PARENT_OTHERINFO, 
COUNT (ID) OVER (PARTITION BY 
[Chr],
[Start],
[End],
[REF], 
[ALT],
[Func#refGene],
[GENE#REFGENE],
[OTHERINFO]) AS PARENT_AMMOUNT 
FROM [Exome Data].DBO.ALLGENEDX 
WHERE ID IN ('1646304GD', '1646307GD'))AS PARENT, 
(SELECT [id],
[Chr],
[Start],
[end],
[REF], 
[ALT],
[Func#refGene],
[GENE#REFGENE],
[OTHERINFO] AS SIBLING_OTHERINFO, 
COUNT (ID) OVER (PARTITION BY
[Chr],
[Start],
[end],
[REF], 
[ALT],
[Func#refGene],
[GENE#REFGENE],
[OTHERINFO]) AS SIBLING_AMMOUNT 
FROM [Exome Data].DBO.ALLGENEDX 
WHERE ID IN ('1646310GD', '1646314GD', '1646317GD', '1646320GD', '1646325GD'))AS SIBLING
   WHERE SIBLING.[CHR]=ALLGENEDX.Chr
  AND SIBLING.[START]=ALLGENEDX.[START]
  AND SIBLING.[END]=ALLGENEDX.[END]
  AND SIBLING.[REF]=ALLGENEDX.[REF]
  AND SIBLING.[ALT]= ALLGENEDX.[ALT] 
  AND SIBLING.[GENE#REFGENE]=ALLGENEDX.[GENE#REFGENE]
  AND PARENT.[CHR]=ALLGENEDX.[Chr]
  AND PARENT.[START]=ALLGENEDX.[START]
  AND PARENT.[END]=ALLGENEDX.[END]
  AND PARENT.[REF]=ALLGENEDX.[REF]
  AND PARENT.[ALT]= ALLGENEDX.[ALT] 
  AND PARENT.[GENE#REFGENE]=ALLGENEDX.[GENE#REFGENE]
  AND  ALLGENEDX.ID= '1646299GD' AND ALLGENEDX.Func#refGene = 'exonic' 
  AND (EXAC_FREQ<'0.005' OR EXAC_FREQ IS NULL)
  AND ([1000G_ALL]<'0.005' OR [1000G_ALL] IS NULL)
  AND (GNOMAD_EXOME_ALL<'0.005' OR GNOMAD_EXOME_ALL IS NULL)
  HAVING CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN PARENT_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN PARENT_OTHERINFO <> 'HOM' AND PARENT_AMMOUNT > 1 THEN 1 ELSE 0 END END > 0
  OR CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN SIBLING_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN SIBLING_OTHERINFO <> 'HOM' AND (SIBLING_AMMOUNT = 1 OR SIBLING_AMMOUNT IS NULL) THEN 1 ELSE 2 END END > 0
  GROUP BY ALLGENEDX.[id]
      ,ALLGENEDX.[Chr]
      ,ALLGENEDX.[Start]
      ,ALLGENEDX.[End]
      ,ALLGENEDX.[ref]
      ,ALLGENEDX.[alt]
      ,ALLGENEDX.[Func#refGene]
      ,ALLGENEDX.[Gene#refGene]
      ,ALLGENEDX.[Otherinfo]
      ,[PARENT_OTHERINFO]
      ,[SIBLING_OTHERINFO]
     ORDER BY len ALLGENEDX.[Chr], Chr, start;

1 Ответ

0 голосов
/ 17 мая 2018

Проблема в том, что у вас есть HAVING до GROUP BY, он должен быть в обратном порядке.

По некоторым причинам в первом ряду также есть лишние левые скобки. 

 GROUP BY ALLGENEDX.[id]
  ,ALLGENEDX.[Chr]
  ...
  ,[SIBLING_OTHERINFO]
 HAVING CASE 
     WHEN OTHERINFO = 'HOM' THEN ...

ORDER BY содержит слово "len", что кажется неправильным, я удалил его, но вы можете проверить это дважды. 

 ORDER BY ALLGENEDX.[Chr], Chr, start;

Ниже приведен полный каталог / группа / имеющий / заказ для второго запроса 

WHERE SIBLING.[CHR]=ALLGENEDX.Chr AND SIBLING.[START]=ALLGENEDX.[START] AND SIBLING.[END]=ALLGENEDX.[END] AND SIBLING.[REF]=ALLGENEDX.[REF] AND SIBLING.[ALT]= ALLGENEDX.[ALT] AND SIBLING.[GENE#REFGENE]=ALLGENEDX.[GENE#REFGENE] AND PARENT.[CHR]=ALLGENEDX.[Chr] AND PARENT.[START]=ALLGENEDX.[START] AND PARENT.[END]=ALLGENEDX.[END] AND PARENT.[REF]=ALLGENEDX.[REF] AND PARENT.[ALT]= ALLGENEDX.[ALT] AND PARENT.[GENE#REFGENE]=ALLGENEDX.[GENE#REFGENE] AND ALLGENEDX.ID= '1646299GD' AND ALLGENEDX.Func#refGene = 'exonic' AND (EXAC_FREQ<'0.005' OR EXAC_FREQ IS NULL) AND ([1000G_ALL]<'0.005' OR [1000G_ALL] IS NULL) AND (GNOMAD_EXOME_ALL<'0.005' OR GNOMAD_EXOME_ALL IS NULL)
GROUP BY ALLGENEDX.[id],ALLGENEDX.[Chr],ALLGENEDX.[Start],ALLGENEDX.[End],ALLGENEDX.[ref],ALLGENEDX.[alt],ALLGENEDX.[Func#refGene],ALLGENEDX.[Gene#refGene],ALLGENEDX.[Otherinfo],[PARENT_OTHERINFO],[SIBLING_OTHERINFO]
HAVING CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN PARENT_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN PARENT_OTHERINFO <> 'HOM' AND PARENT_AMMOUNT > 1 THEN 1 ELSE 0 END END > 0 OR CASE WHEN OTHERINFO = 'HOM' THEN CASE WHEN SIBLING_OTHERINFO = 'HET' THEN 1 ELSE 0 END ELSE CASE WHEN SIBLING_OTHERINFO <> 'HOM' AND (SIBLING_AMMOUNT = 1 OR SIBLING_AMMOUNT IS NULL) THEN 1 ELSE 2 END END > 0
ORDER BY ALLGENEDX.[Chr], Chr, start;
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