Я пытаюсь установить пакет R из учетной записи github, используя " install_github " из пакета devtools .
Во время установки пакета в сообщении говорится, что 2 пакета (упомянутых в разделе Импорт файла DESCRIPTION) пропущены и недоступны.
Я заметил, что эти 2 пакета из биокондуктора.
Есть ли способ это исправить?
Заранее спасибо
> devtools::install_github("monahton/GencoDymo")
Downloading GitHub repo monahton/GencoDymo@master
Skipping 2 packages not available: rtracklayer, BSgenome.Hsapiens.UCSC.hg38
✓ checking for file ‘/private/var/folders/hw/lx3hllbd38739x4174bsxvy40000gn/T/RtmpzV98vD/remotes4aba28ab33/monahton-GencoDymo-d87f715/DESCRIPTION’ ...
─ preparing ‘GencoDymo’:
✓ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘GencoDymo_0.2.1.tar.gz’
* installing *source* package ‘GencoDymo’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GencoDymo)
> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: OS X El Capitan 10.11.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.3 rstudioapi_0.10 magrittr_1.5 usethis_1.5.1
[5] devtools_2.2.1.9000 pkgload_1.0.2 R6_2.4.1 rlang_0.4.2
[9] fansi_0.4.0 tools_3.6.1 pkgbuild_1.0.6 sessioninfo_1.1.1
[13] cli_2.0.0 withr_2.1.2 ellipsis_0.3.0 remotes_2.1.0
[17] yaml_2.2.0 assertthat_0.2.1 digest_0.6.23 rprojroot_1.3-2
[21] crayon_1.3.4 processx_3.4.1 callr_3.4.0 fs_1.3.1
[25] ps_1.3.0 curl_4.3 testthat_2.3.1 memoise_1.1.0
[29] glue_1.3.1 compiler_3.6.1 desc_1.2.0 backports_1.1.5
[33] prettyunits_1.0.2