Я пытаюсь установить networkit 6.1 на macOS 10.15.4 с python 3.8.
Я дважды проверил и убедился, что у меня есть все требования.
pip3 ошибок при Building wheel for networkit (setup.py)
Вот что говорит сообщение об ошибке. После продолжительного поиска в Google, я все еще не уверен, что это значит.
Я хотел бы получить любую информацию, которая может быть предоставлена. Вот невероятно длинный код ошибки:
pip3 install networkit
Collecting networkit
Using cached networkit-6.1.tar.gz (2.0 MB)
Requirement already satisfied: scipy in /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages (from networkit) (1.4.1)
Requirement already satisfied: numpy in /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages (from networkit) (1.18.1)
Building wheels for collected packages: networkit
Building wheel for networkit (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/setup.py'"'"'; __file__='"'"'/private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-wheel-bqalgacb
cwd: /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/
Complete output (518 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/simulation.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/sparsification.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/coloring.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/viztasks.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/graphio.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/plot.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/randomization.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/support.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/clique.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/GraphMLIO.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/linkprediction.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/partitioning.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/globals.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/graph.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/scd.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/flow.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/coarsening.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/algebraic.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/distance.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/stopwatch.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/matching.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/GEXFIO.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/generators.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/centrality.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/dynamic.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/community.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/stats.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/sampling.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/workflows.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/engineering.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/exceptions.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/structures.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/components.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/viz.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/correlation.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/nxadapter.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
creating build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_randomization.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_community.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_graphio.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_generators.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_graphtools.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_graph_traversal.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_sparsification.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_graph.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_algorithms.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
creating build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
copying networkit/gephi/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
copying networkit/gephi/csv.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
copying networkit/gephi/pyclient.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
copying networkit/gephi/streaming.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
creating build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/plot.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/multiprocessing_helper.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/job.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/stat.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/profiling.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
creating build/lib.macosx-10.9-x86_64-3.8/networkit/test/extension
copying networkit/test/extension/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test/extension
copying networkit/test/extension/test.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test/extension
creating build/lib.macosx-10.9-x86_64-3.8/networkit/test/gephi
copying networkit/test/gephi/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test/gephi
creating build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/profile.html -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/profiling.css -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/measure.html -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/profiling.js -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/overlay.html -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
creating build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/latex
copying networkit/profiling/latex/measure.tex -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/latex
copying networkit/profiling/latex/profile.tex -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/latex
creating build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/description
copying networkit/profiling/description/descriptions.txt -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/description
running build_ext
Cython not available, but _NetworKit.cpp provided. Continue build without cythonizing
initializing NetworKit compilation with: 'cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/build/lib.macosx-10.9-x86_64-3.8 -DCMAKE_CXX_COMPILER=c++ -DNETWORKIT_FLATINSTALL=ON -DNETWORKIT_PYTHON=/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8 -DNETWORKIT_PYTHON_SOABI=cpython-38-darwin /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit'
-- The CXX compiler identification is AppleClang 11.0.3.11030032
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
-- Could NOT find OpenMP (missing: OpenMP_CXX_FOUND)
-- Found OpenMP_CXX: -Xpreprocessor -fopenmp -I/usr/local/include (found version "3.1")
-- Found OpenMP: TRUE (found version "3.1")
-- The C compiler identification is AppleClang 11.0.3.11030032
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test TLX_CXX_HAS_CXX17
-- Performing Test TLX_CXX_HAS_CXX17 - Success
-- TLX CMAKE_CXX_FLAGS: -Wshadow -Wold-style-cast -std=c++17 -g -W -Wall -Wextra -fPIC -Wdeprecated
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- sphinx-build not found. Disable documentation targets
-- Configuring done
-- Generating done
-- Build files have been written to: /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/build/build_python
Build with: 'make install -j4'
Scanning dependencies of target tlx
[ 1%] Building CXX object extlibs/tlx/tlx/CMakeFiles/tlx.dir/algorithm/parallel_multiway_merge.cpp.o
[ 1%] Building CXX object extlibs/tlx/tlx/CMakeFiles/tlx.dir/backtrace.cpp.o
[ 1%] Building CXX object extlibs/tlx/tlx/CMakeFiles/tlx.dir/die/core.cpp.o
[ 1%] Building CXX object extlibs/tlx/tlx/CMakeFiles/tlx.dir/cmdline_parser.cpp.o
[ 1%] Building CXX object extlibs/tlx/tlx/CMakeFiles/tlx.dir/digest/md5.cpp.o
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[ 2%] Building CXX object extlibs/tlx/tlx/CMakeFiles/tlx.dir/logger/core.cpp.o
...edited for brevity....
[ 88%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/linkprediction/UDegreeIndex.cpp.o
[ 88%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/linkprediction/VDegreeIndex.cpp.o
[ 89%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/matching/LocalMaxMatcher.cpp.o
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[ 89%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/matching/Matching.cpp.o
[ 90%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/matching/PathGrowingMatcher.cpp.o
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[ 91%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/randomization/Curveball.cpp.o
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[ 92%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/randomization/DegreePreservingShuffle.cpp.o
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[ 92%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/scd/ApproximatePageRank.cpp.o
clang: error: unable to execute command: Segmentation fault: 11
clang: error: clang frontend command failed due to signal (use -v to see invocation)
Apple clang version 11.0.3 (clang-1103.0.32.29)
Target: x86_64-apple-darwin19.4.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
clang: note: diagnostic msg: PLEASE submit a bug report to http://developer.apple.com/bugreporter/ and include the crash backtrace, preprocessed source, and associated run script.
clang: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
clang: note: diagnostic msg: /var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/DegreePreservingShuffle-57cb30.cpp
clang: note: diagnostic msg: /var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/DegreePreservingShuffle-57cb30.sh
clang: note: diagnostic msg: Crash backtrace is located in
clang: note: diagnostic msg: /Users/derycpainter/Library/Logs/DiagnosticReports/clang_<YYYY-MM-DD-HHMMSS>_<hostname>.crash
clang: note: diagnostic msg: (choose the .crash file that corresponds to your crash)
clang: note: diagnostic msg:
********************
make[2]: *** [CMakeFiles/networkit.dir/networkit/cpp/randomization/DegreePreservingShuffle.cpp.o] Error 254
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/networkit.dir/all] Error 2
make: *** [all] Error 2
Build tool returned an error, exiting setup.py
----------------------------------------
ERROR: Failed building wheel for networkit
Running setup.py clean for networkit
Failed to build networkit
Installing collected packages: networkit
Running setup.py install for networkit ... error
ERROR: Command errored out with exit status 1:
command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/setup.py'"'"'; __file__='"'"'/private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-record-f2ad9aq9/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /Users/derycpainter/Library/Python/3.8/include/python3.8/networkit
cwd: /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/
Complete output (123 lines):
running install
running build
running build_py
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/simulation.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/sparsification.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/coloring.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/viztasks.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/graphio.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/plot.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/randomization.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/support.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/clique.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/GraphMLIO.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/linkprediction.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/partitioning.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/globals.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/graph.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/scd.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/flow.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/coarsening.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/algebraic.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/distance.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/stopwatch.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/matching.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/GEXFIO.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/generators.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/centrality.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/dynamic.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/community.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/stats.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/sampling.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/workflows.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/engineering.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/exceptions.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/structures.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/components.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/viz.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/correlation.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
copying networkit/nxadapter.py -> build/lib.macosx-10.9-x86_64-3.8/networkit
creating build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_randomization.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_community.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_graphio.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_generators.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_graphtools.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_graph_traversal.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_sparsification.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_graph.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
copying networkit/test/test_algorithms.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test
creating build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
copying networkit/gephi/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
copying networkit/gephi/csv.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
copying networkit/gephi/pyclient.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
copying networkit/gephi/streaming.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/gephi
creating build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/plot.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/multiprocessing_helper.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/job.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/stat.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
copying networkit/profiling/profiling.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling
creating build/lib.macosx-10.9-x86_64-3.8/networkit/test/extension
copying networkit/test/extension/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test/extension
copying networkit/test/extension/test.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test/extension
creating build/lib.macosx-10.9-x86_64-3.8/networkit/test/gephi
copying networkit/test/gephi/__init__.py -> build/lib.macosx-10.9-x86_64-3.8/networkit/test/gephi
creating build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/profile.html -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/profiling.css -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/measure.html -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/profiling.js -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
copying networkit/profiling/html/overlay.html -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/html
creating build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/latex
copying networkit/profiling/latex/measure.tex -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/latex
copying networkit/profiling/latex/profile.tex -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/latex
creating build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/description
copying networkit/profiling/description/descriptions.txt -> build/lib.macosx-10.9-x86_64-3.8/networkit/profiling/description
running build_ext
Cython not available, but _NetworKit.cpp provided. Continue build without cythonizing
initializing NetworKit compilation with: 'cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/build/lib.macosx-10.9-x86_64-3.8 -DCMAKE_CXX_COMPILER=c++ -DNETWORKIT_FLATINSTALL=ON -DNETWORKIT_PYTHON=/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8 -DNETWORKIT_PYTHON_SOABI=cpython-38-darwin /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit'
-- Found OpenMP_CXX: -Xpreprocessor -fopenmp -I/usr/local/include
-- Found OpenMP: TRUE
-- TLX CMAKE_CXX_FLAGS: -Wshadow -Wold-style-cast -std=c++17 -g -W -Wall -Wextra -fPIC -Wdeprecated
-- sphinx-build not found. Disable documentation targets
-- Configuring done
-- Generating done
-- Build files have been written to: /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/build/build_python
Build with: 'make install -j4'
[ 13%] Built target tlx
[ 15%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/randomization/DegreePreservingShuffle.cpp.o
[ 15%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/scd/GCE.cpp.o
[ 15%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/scd/PageRankNibble.cpp.o
[ 15%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/scd/SelectiveCommunityDetector.cpp.o
clang: error: unable to execute command: Segmentation fault: 11
clang: error: clang frontend command failed due to signal (use -v to see invocation)
Apple clang version 11.0.3 (clang-1103.0.32.29)
Target: x86_64-apple-darwin19.4.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
clang: note: diagnostic msg: PLEASE submit a bug report to http://developer.apple.com/bugreporter/ and include the crash backtrace, preprocessed source, and associated run script.
[ 16%] Building CXX object CMakeFiles/networkit.dir/networkit/cpp/simulation/EpidemicSimulationSEIR.cpp.o
clang: note: diagnostic msg:
********************
PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
clang: note: diagnostic msg: /var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/DegreePreservingShuffle-264185.cpp
clang: note: diagnostic msg: /var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/DegreePreservingShuffle-264185.sh
clang: note: diagnostic msg: Crash backtrace is located in
clang: note: diagnostic msg: /Users/derycpainter/Library/Logs/DiagnosticReports/clang_<YYYY-MM-DD-HHMMSS>_<hostname>.crash
clang: note: diagnostic msg: (choose the .crash file that corresponds to your crash)
clang: note: diagnostic msg:
********************
make[2]: *** [CMakeFiles/networkit.dir/networkit/cpp/randomization/DegreePreservingShuffle.cpp.o] Error 254
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/networkit.dir/all] Error 2
make: *** [all] Error 2
Build tool returned an error, exiting setup.py
----------------------------------------
ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/setup.py'"'"'; __file__='"'"'/private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-install-khdr64cp/networkit/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/gy/2kn7_0x140z14dgv422v38jh0000gn/T/pip-record-f2ad9aq9/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /Users/derycpainter/Library/Python/3.8/include/python3.8/networkit Check the logs for full command output.