У меня проблемы с установкой dplyr. Я новичок sh в R (я работаю над этой книгой socviz.co и нахожусь в главе 5), поэтому до сих пор не очень знаком со всеми обходными путями и тонкостями для его использования в Ubuntu (и в этом отношении есть используется только терминал с перерывами с момента установки Ubuntu). Код R возвращается, когда я пытаюсь установить dplyr ниже. Буду признателен за любую помощь, которую вы можете оказать
> install.packages("dplyr")
Installing package into ‘/home/tankus/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/dplyr_0.8.3.tar.gz'
Content type 'application/x-gzip' length 1173098 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
* installing *source* package ‘dplyr’ ...
** package ‘dplyr’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c address.cpp -o address.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arrange.cpp -o arrange.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c between.cpp -o between.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bind.cpp -o bind.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distinct.cpp -o distinct.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c encoding.cpp -o encoding.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filter.cpp -o filter.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group_indices.cpp -o group_indices.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hybrid.cpp -o hybrid.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c join.cpp -o join.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c join_exports.cpp -o join_exports.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mutate.cpp -o mutate.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlang-export.c -o rlang-export.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlang.cpp -o rlang.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c select.cpp -o select.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c set.cpp -o set.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summarise.cpp -o summarise.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test.cpp -o test.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils-bindings.cpp -o utils-bindings.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_DPLYR -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -DBOOST_NO_AUTO_PTR -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/BH/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/plogr/include" -I"/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c window.cpp -o window.o
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o dplyr.so RcppExports.o address.o api.o arrange.o between.o bind.o distinct.o encoding.o filter.o group_indices.o hybrid.o init.o join.o join_exports.o mutate.o rlang-export.o rlang.o select.o set.o summarise.o test.o utils-bindings.o utils.o window.o -L/usr/lib/R/lib -lR
installing to /home/tankus/R/x86_64-pc-linux-gnu-library/3.4/dplyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (dplyr)
The downloaded source packages are in
‘/tmp/RtmpgBxlR0/downloaded_packages’
Error in fetch(key) :
lazy-load database '/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/dplyr/help/dplyr.rdb' is corrupt
Error in fetch(key) :
lazy-load database '/home/tankus/R/x86_64-pc-linux-gnu-library/3.4/dplyr/help/dplyr.rdb' is corrupt
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union