Я пытаюсь обновить библиотеку cfitsio python, но получаю ошибку, которую не понимаю (кроме предупреждения Python2 .7):
~$ sudo pip install --upgrade fitsio
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
WARNING: The directory '/home/username/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting fitsio
Downloading fitsio-1.1.1.tar.gz (5.0 MB)
|████████████████████████████████| 5.0 MB 3.1 MB/s
Requirement already satisfied, skipping upgrade: numpy in /usr/local/lib/python2.7/dist-packages (from fitsio) (1.14.0)
Building wheels for collected packages: fitsio
Building wheel for fitsio (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-Fr2xmK/fitsio/setup.py'"'"'; __file__='"'"'/tmp/pip-install-Fr2xmK/fitsio/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rIbaaq
cwd: /tmp/pip-install-Fr2xmK/fitsio/
Complete output (113 lines):
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'long_description_content_type'
warnings.warn(msg)
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/fitsio
copying fitsio/util.py -> build/lib.linux-x86_64-2.7/fitsio
copying fitsio/test.py -> build/lib.linux-x86_64-2.7/fitsio
copying fitsio/fitslib.py -> build/lib.linux-x86_64-2.7/fitsio
copying fitsio/__init__.py -> build/lib.linux-x86_64-2.7/fitsio
copying fitsio/header.py -> build/lib.linux-x86_64-2.7/fitsio
creating build/lib.linux-x86_64-2.7/fitsio/hdu
copying fitsio/hdu/table.py -> build/lib.linux-x86_64-2.7/fitsio/hdu
copying fitsio/hdu/base.py -> build/lib.linux-x86_64-2.7/fitsio/hdu
copying fitsio/hdu/__init__.py -> build/lib.linux-x86_64-2.7/fitsio/hdu
copying fitsio/hdu/image.py -> build/lib.linux-x86_64-2.7/fitsio/hdu
running build_ext
checking file build/temp.linux-x86_64-2.7/cfitsio3470/putcols.c
Hunk #1 succeeded at 157 (offset -1 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/putcols.c
Hunk #1 succeeded at 157 (offset -1 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/fitsio.h
Hunk #1 succeeded at 806 (offset 9 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/fitsio.h
Hunk #1 succeeded at 806 (offset 9 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/configure
Hunk #1 succeeded at 711 with fuzz 2 (offset 3 lines).
Hunk #2 succeeded at 1345 (offset 5 lines).
Hunk #3 succeeded at 2337 (offset 84 lines).
Hunk #4 succeeded at 5200 (offset 117 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/configure
Hunk #1 succeeded at 711 with fuzz 2 (offset 3 lines).
Hunk #2 succeeded at 1345 (offset 5 lines).
Hunk #3 succeeded at 2337 (offset 84 lines).
Hunk #4 succeeded at 5200 (offset 117 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/configure.in
Hunk #1 succeeded at 52 (offset 10 lines).
Hunk #2 succeeded at 610 (offset 21 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/configure.in
Hunk #1 succeeded at 52 (offset 10 lines).
Hunk #2 succeeded at 610 (offset 21 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/fitscore.c
Hunk #1 succeeded at 186 (offset 4 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/fitscore.c
Hunk #1 succeeded at 186 (offset 4 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/drvrnet.c
patching file build/temp.linux-x86_64-2.7/cfitsio3470/drvrnet.c
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for gcc... x86_64-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-linux-gnu-gcc accepts -g... yes
checking for x86_64-linux-gnu-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for main in -lbz2... no
configure: error: Unable to locate bz2 library needed when enabling bzip2 support; try specifying the path
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-Fr2xmK/fitsio/setup.py", line 289, in <module>
cmdclass={"build_ext": build_ext_subclass}
File "/usr/local/lib/python2.7/dist-packages/setuptools/__init__.py", line 129, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/lib/python2.7/dist-packages/wheel/bdist_wheel.py", line 179, in run
self.run_command('build')
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run
self.run_command(cmd_name)
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-install-Fr2xmK/fitsio/setup.py", line 72, in run
build_ext.run(self)
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/build_ext.py", line 75, in run
_build_ext.run(self)
File "/usr/local/lib/python2.7/dist-packages/Cython/Distutils/old_build_ext.py", line 186, in run
_build_ext.build_ext.run(self)
File "/usr/lib/python2.7/distutils/command/build_ext.py", line 339, in run
self.build_extensions()
File "/tmp/pip-install-Fr2xmK/fitsio/setup.py", line 100, in build_extensions
RANLIB=self.compiler.ranlib,
File "/tmp/pip-install-Fr2xmK/fitsio/setup.py", line 227, in configure_cfitsio
"could not configure cfitsio %s" % self.cfitsio_version)
ValueError: could not configure cfitsio 3470
----------------------------------------
ERROR: Failed building wheel for fitsio
Running setup.py clean for fitsio
Failed to build fitsio
Installing collected packages: fitsio
Attempting uninstall: fitsio
Found existing installation: fitsio 0.9.11
Uninstalling fitsio-0.9.11:
Successfully uninstalled fitsio-0.9.11
Running setup.py install for fitsio ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-Fr2xmK/fitsio/setup.py'"'"'; __file__='"'"'/tmp/pip-install-Fr2xmK/fitsio/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-r3Z0xt/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python2.7/fitsio
cwd: /tmp/pip-install-Fr2xmK/fitsio/
Complete output (115 lines):
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'long_description_content_type'
warnings.warn(msg)
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/fitsio
copying fitsio/util.py -> build/lib.linux-x86_64-2.7/fitsio
copying fitsio/test.py -> build/lib.linux-x86_64-2.7/fitsio
copying fitsio/fitslib.py -> build/lib.linux-x86_64-2.7/fitsio
copying fitsio/__init__.py -> build/lib.linux-x86_64-2.7/fitsio
copying fitsio/header.py -> build/lib.linux-x86_64-2.7/fitsio
creating build/lib.linux-x86_64-2.7/fitsio/hdu
copying fitsio/hdu/table.py -> build/lib.linux-x86_64-2.7/fitsio/hdu
copying fitsio/hdu/base.py -> build/lib.linux-x86_64-2.7/fitsio/hdu
copying fitsio/hdu/__init__.py -> build/lib.linux-x86_64-2.7/fitsio/hdu
copying fitsio/hdu/image.py -> build/lib.linux-x86_64-2.7/fitsio/hdu
running build_ext
checking file build/temp.linux-x86_64-2.7/cfitsio3470/putcols.c
Hunk #1 succeeded at 157 (offset -1 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/putcols.c
Hunk #1 succeeded at 157 (offset -1 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/fitsio.h
Hunk #1 succeeded at 806 (offset 9 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/fitsio.h
Hunk #1 succeeded at 806 (offset 9 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/configure
Hunk #1 succeeded at 711 with fuzz 2 (offset 3 lines).
Hunk #2 succeeded at 1345 (offset 5 lines).
Hunk #3 succeeded at 2337 (offset 84 lines).
Hunk #4 succeeded at 5200 (offset 117 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/configure
Hunk #1 succeeded at 711 with fuzz 2 (offset 3 lines).
Hunk #2 succeeded at 1345 (offset 5 lines).
Hunk #3 succeeded at 2337 (offset 84 lines).
Hunk #4 succeeded at 5200 (offset 117 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/configure.in
Hunk #1 succeeded at 52 (offset 10 lines).
Hunk #2 succeeded at 610 (offset 21 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/configure.in
Hunk #1 succeeded at 52 (offset 10 lines).
Hunk #2 succeeded at 610 (offset 21 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/fitscore.c
Hunk #1 succeeded at 186 (offset 4 lines).
patching file build/temp.linux-x86_64-2.7/cfitsio3470/fitscore.c
Hunk #1 succeeded at 186 (offset 4 lines).
checking file build/temp.linux-x86_64-2.7/cfitsio3470/drvrnet.c
patching file build/temp.linux-x86_64-2.7/cfitsio3470/drvrnet.c
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for gcc... x86_64-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-linux-gnu-gcc accepts -g... yes
checking for x86_64-linux-gnu-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for main in -lbz2... no
configure: error: Unable to locate bz2 library needed when enabling bzip2 support; try specifying the path
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-Fr2xmK/fitsio/setup.py", line 289, in <module>
cmdclass={"build_ext": build_ext_subclass}
File "/usr/local/lib/python2.7/dist-packages/setuptools/__init__.py", line 129, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/install.py", line 61, in run
return orig.install.run(self)
File "/usr/lib/python2.7/distutils/command/install.py", line 601, in run
self.run_command('build')
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run
self.run_command(cmd_name)
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/pip-install-Fr2xmK/fitsio/setup.py", line 72, in run
build_ext.run(self)
File "/usr/local/lib/python2.7/dist-packages/setuptools/command/build_ext.py", line 75, in run
_build_ext.run(self)
File "/usr/local/lib/python2.7/dist-packages/Cython/Distutils/old_build_ext.py", line 186, in run
_build_ext.build_ext.run(self)
File "/usr/lib/python2.7/distutils/command/build_ext.py", line 339, in run
self.build_extensions()
File "/tmp/pip-install-Fr2xmK/fitsio/setup.py", line 100, in build_extensions
RANLIB=self.compiler.ranlib,
File "/tmp/pip-install-Fr2xmK/fitsio/setup.py", line 227, in configure_cfitsio
"could not configure cfitsio %s" % self.cfitsio_version)
ValueError: could not configure cfitsio 3470
----------------------------------------
Rolling back uninstall of fitsio
Moving to /usr/local/lib/python2.7/dist-packages/fitsio-0.9.11.egg-info
from /usr/local/lib/python2.7/dist-packages/~itsio-0.9.11.egg-info
Moving to /usr/local/lib/python2.7/dist-packages/fitsio/
from /usr/local/lib/python2.7/dist-packages/~itsio
ERROR: Command errored out with exit status 1: /usr/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-Fr2xmK/fitsio/setup.py'"'"'; __file__='"'"'/tmp/pip-install-Fr2xmK/fitsio/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-r3Z0xt/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python2.7/fitsio Check the logs for full command output.
`