У меня есть 28 файлов с двумя столбцами в каждом, которые выглядят следующим образом:
165654 25
536619 26
886914 27
592837 28
457213 29
2462004 30
1278237 31
100659 32
72829 33
11249 34
4136 35
Где первый столбец - это счетчик чтения, а второй - длина чтения. Я пытаюсь объединить 28 файлов в R в матрицу, которая выглядит так:
, но у меня проблемы с последними шагами, поэтому далеко я пробовал это:
library(tidyverse)
library(data.table)
list_of_files <- list.files(path = ".", recursive = TRUE,
pattern = "\\.txt$",
full.names = TRUE)
DT <- rbindlist(sapply(list_of_files, fread, simplify = FALSE),
use.names = TRUE, idcol = "FileName")
dput(DT)
structure(list(FileName = c("./LC1a_S1_R1_001.fastq.bam.txt",
"./LC1a_S1_R1_001.fastq.bam.txt", "./LC1a_S1_R1_001.fastq.bam.txt",
"./LC1a_S1_R1_001.fastq.bam.txt", "./LC1a_S1_R1_001.fastq.bam.txt",
"./LC1a_S1_R1_001.fastq.bam.txt", "./LC1a_S1_R1_001.fastq.bam.txt",
"./LC1a_S1_R1_001.fastq.bam.txt", "./LC1a_S1_R1_001.fastq.bam.txt",
"./LC1a_S1_R1_001.fastq.bam.txt", "./LC1a_S1_R1_001.fastq.bam.txt",
"./LC1b_S8_R1_001.fastq.bam.txt", "./LC1b_S8_R1_001.fastq.bam.txt",
"./LC1b_S8_R1_001.fastq.bam.txt", "./LC1b_S8_R1_001.fastq.bam.txt",
"./LC1b_S8_R1_001.fastq.bam.txt", "./LC1b_S8_R1_001.fastq.bam.txt",
"./LC1b_S8_R1_001.fastq.bam.txt", "./LC1b_S8_R1_001.fastq.bam.txt",
"./LC1b_S8_R1_001.fastq.bam.txt", "./LC1b_S8_R1_001.fastq.bam.txt",
"./LC1b_S8_R1_001.fastq.bam.txt", "./LC1c_S15_R1_001.fastq.bam.txt",
"./LC1c_S15_R1_001.fastq.bam.txt", "./LC1c_S15_R1_001.fastq.bam.txt",
"./LC1c_S15_R1_001.fastq.bam.txt", "./LC1c_S15_R1_001.fastq.bam.txt",
"./LC1c_S15_R1_001.fastq.bam.txt", "./LC1c_S15_R1_001.fastq.bam.txt",
"./LC1c_S15_R1_001.fastq.bam.txt", "./LC1c_S15_R1_001.fastq.bam.txt",
"./LC1c_S15_R1_001.fastq.bam.txt", "./LC1c_S15_R1_001.fastq.bam.txt",
"./LC1d_S22_R1_001.fastq.bam.txt", "./LC1d_S22_R1_001.fastq.bam.txt",
"./LC1d_S22_R1_001.fastq.bam.txt", "./LC1d_S22_R1_001.fastq.bam.txt",
"./LC1d_S22_R1_001.fastq.bam.txt", "./LC1d_S22_R1_001.fastq.bam.txt",
"./LC1d_S22_R1_001.fastq.bam.txt", "./LC1d_S22_R1_001.fastq.bam.txt",
"./LC1d_S22_R1_001.fastq.bam.txt", "./LC1d_S22_R1_001.fastq.bam.txt",
"./LC1d_S22_R1_001.fastq.bam.txt", "./LC2a_S2_R1_001.fastq.bam.txt",
"./LC2a_S2_R1_001.fastq.bam.txt", "./LC2a_S2_R1_001.fastq.bam.txt",
"./LC2a_S2_R1_001.fastq.bam.txt", "./LC2a_S2_R1_001.fastq.bam.txt",
"./LC2a_S2_R1_001.fastq.bam.txt", "./LC2a_S2_R1_001.fastq.bam.txt",
"./LC2a_S2_R1_001.fastq.bam.txt", "./LC2a_S2_R1_001.fastq.bam.txt",
"./LC2a_S2_R1_001.fastq.bam.txt", "./LC2a_S2_R1_001.fastq.bam.txt",
"./LC2b_S9_R1_001.fastq.bam.txt", "./LC2b_S9_R1_001.fastq.bam.txt",
"./LC2b_S9_R1_001.fastq.bam.txt", "./LC2b_S9_R1_001.fastq.bam.txt",
"./LC2b_S9_R1_001.fastq.bam.txt", "./LC2b_S9_R1_001.fastq.bam.txt",
"./LC2b_S9_R1_001.fastq.bam.txt", "./LC2b_S9_R1_001.fastq.bam.txt",
"./LC2b_S9_R1_001.fastq.bam.txt", "./LC2b_S9_R1_001.fastq.bam.txt",
"./LC2b_S9_R1_001.fastq.bam.txt", "./LC2c_S16_R1_001.fastq.bam.txt",
"./LC2c_S16_R1_001.fastq.bam.txt", "./LC2c_S16_R1_001.fastq.bam.txt",
"./LC2c_S16_R1_001.fastq.bam.txt", "./LC2c_S16_R1_001.fastq.bam.txt",
"./LC2c_S16_R1_001.fastq.bam.txt", "./LC2c_S16_R1_001.fastq.bam.txt",
"./LC2c_S16_R1_001.fastq.bam.txt", "./LC2c_S16_R1_001.fastq.bam.txt",
"./LC2c_S16_R1_001.fastq.bam.txt", "./LC2c_S16_R1_001.fastq.bam.txt",
"./LC2d_S23_R1_001.fastq.bam.txt", "./LC2d_S23_R1_001.fastq.bam.txt",
"./LC2d_S23_R1_001.fastq.bam.txt", "./LC2d_S23_R1_001.fastq.bam.txt",
"./LC2d_S23_R1_001.fastq.bam.txt", "./LC2d_S23_R1_001.fastq.bam.txt",
"./LC2d_S23_R1_001.fastq.bam.txt", "./LC2d_S23_R1_001.fastq.bam.txt",
"./LC2d_S23_R1_001.fastq.bam.txt", "./LC2d_S23_R1_001.fastq.bam.txt",
"./LC2d_S23_R1_001.fastq.bam.txt", "./LC3a_S3_R1_001.fastq.bam.txt",
"./LC3a_S3_R1_001.fastq.bam.txt", "./LC3a_S3_R1_001.fastq.bam.txt",
"./LC3a_S3_R1_001.fastq.bam.txt", "./LC3a_S3_R1_001.fastq.bam.txt",
"./LC3a_S3_R1_001.fastq.bam.txt", "./LC3a_S3_R1_001.fastq.bam.txt",
"./LC3a_S3_R1_001.fastq.bam.txt", "./LC3a_S3_R1_001.fastq.bam.txt",
"./LC3a_S3_R1_001.fastq.bam.txt", "./LC3a_S3_R1_001.fastq.bam.txt",
"./LC3b_S10_R1_001.fastq.bam.txt", "./LC3b_S10_R1_001.fastq.bam.txt",
"./LC3b_S10_R1_001.fastq.bam.txt", "./LC3b_S10_R1_001.fastq.bam.txt",
"./LC3b_S10_R1_001.fastq.bam.txt", "./LC3b_S10_R1_001.fastq.bam.txt",
"./LC3b_S10_R1_001.fastq.bam.txt", "./LC3b_S10_R1_001.fastq.bam.txt",
"./LC3b_S10_R1_001.fastq.bam.txt", "./LC3b_S10_R1_001.fastq.bam.txt",
"./LC3b_S10_R1_001.fastq.bam.txt", "./LC3c_S17_R1_001.fastq.bam.txt",
"./LC3c_S17_R1_001.fastq.bam.txt", "./LC3c_S17_R1_001.fastq.bam.txt",
"./LC3c_S17_R1_001.fastq.bam.txt", "./LC3c_S17_R1_001.fastq.bam.txt",
"./LC3c_S17_R1_001.fastq.bam.txt", "./LC3c_S17_R1_001.fastq.bam.txt",
"./LC3c_S17_R1_001.fastq.bam.txt", "./LC3c_S17_R1_001.fastq.bam.txt",
"./LC3c_S17_R1_001.fastq.bam.txt", "./LC3c_S17_R1_001.fastq.bam.txt",
"./LC3d_S24_R1_001.fastq.bam.txt", "./LC3d_S24_R1_001.fastq.bam.txt",
"./LC3d_S24_R1_001.fastq.bam.txt", "./LC3d_S24_R1_001.fastq.bam.txt",
"./LC3d_S24_R1_001.fastq.bam.txt", "./LC3d_S24_R1_001.fastq.bam.txt",
"./LC3d_S24_R1_001.fastq.bam.txt", "./LC3d_S24_R1_001.fastq.bam.txt",
"./LC3d_S24_R1_001.fastq.bam.txt", "./LC3d_S24_R1_001.fastq.bam.txt",
"./LC3d_S24_R1_001.fastq.bam.txt", "./LC4a_S4_R1_001.fastq.bam.txt",
"./LC4a_S4_R1_001.fastq.bam.txt", "./LC4a_S4_R1_001.fastq.bam.txt",
"./LC4a_S4_R1_001.fastq.bam.txt", "./LC4a_S4_R1_001.fastq.bam.txt",
"./LC4a_S4_R1_001.fastq.bam.txt", "./LC4a_S4_R1_001.fastq.bam.txt",
"./LC4a_S4_R1_001.fastq.bam.txt", "./LC4a_S4_R1_001.fastq.bam.txt",
"./LC4a_S4_R1_001.fastq.bam.txt", "./LC4a_S4_R1_001.fastq.bam.txt",
"./LC4b_S11_R1_001.fastq.bam.txt", "./LC4b_S11_R1_001.fastq.bam.txt",
"./LC4b_S11_R1_001.fastq.bam.txt", "./LC4b_S11_R1_001.fastq.bam.txt",
"./LC4b_S11_R1_001.fastq.bam.txt", "./LC4b_S11_R1_001.fastq.bam.txt",
"./LC4b_S11_R1_001.fastq.bam.txt", "./LC4b_S11_R1_001.fastq.bam.txt",
"./LC4b_S11_R1_001.fastq.bam.txt", "./LC4b_S11_R1_001.fastq.bam.txt",
"./LC4b_S11_R1_001.fastq.bam.txt", "./LC4c_S18_R1_001.fastq.bam.txt",
"./LC4c_S18_R1_001.fastq.bam.txt", "./LC4c_S18_R1_001.fastq.bam.txt",
"./LC4c_S18_R1_001.fastq.bam.txt", "./LC4c_S18_R1_001.fastq.bam.txt",
"./LC4c_S18_R1_001.fastq.bam.txt", "./LC4c_S18_R1_001.fastq.bam.txt",
"./LC4c_S18_R1_001.fastq.bam.txt", "./LC4c_S18_R1_001.fastq.bam.txt",
"./LC4c_S18_R1_001.fastq.bam.txt", "./LC4c_S18_R1_001.fastq.bam.txt",
"./LC4d_S25_R1_001.fastq.bam.txt", "./LC4d_S25_R1_001.fastq.bam.txt",
"./LC4d_S25_R1_001.fastq.bam.txt", "./LC4d_S25_R1_001.fastq.bam.txt",
"./LC4d_S25_R1_001.fastq.bam.txt", "./LC4d_S25_R1_001.fastq.bam.txt",
"./LC4d_S25_R1_001.fastq.bam.txt", "./LC4d_S25_R1_001.fastq.bam.txt",
"./LC4d_S25_R1_001.fastq.bam.txt", "./LC4d_S25_R1_001.fastq.bam.txt",
"./LC4d_S25_R1_001.fastq.bam.txt", "./LC5a_S5_R1_001.fastq.bam.txt",
"./LC5a_S5_R1_001.fastq.bam.txt", "./LC5a_S5_R1_001.fastq.bam.txt",
"./LC5a_S5_R1_001.fastq.bam.txt", "./LC5a_S5_R1_001.fastq.bam.txt",
"./LC5a_S5_R1_001.fastq.bam.txt", "./LC5a_S5_R1_001.fastq.bam.txt",
"./LC5a_S5_R1_001.fastq.bam.txt", "./LC5a_S5_R1_001.fastq.bam.txt",
"./LC5a_S5_R1_001.fastq.bam.txt", "./LC5a_S5_R1_001.fastq.bam.txt",
"./LC5b_S12_R1_001.fastq.bam.txt", "./LC5b_S12_R1_001.fastq.bam.txt",
"./LC5b_S12_R1_001.fastq.bam.txt", "./LC5b_S12_R1_001.fastq.bam.txt",
"./LC5b_S12_R1_001.fastq.bam.txt", "./LC5b_S12_R1_001.fastq.bam.txt",
"./LC5b_S12_R1_001.fastq.bam.txt", "./LC5b_S12_R1_001.fastq.bam.txt",
"./LC5b_S12_R1_001.fastq.bam.txt", "./LC5b_S12_R1_001.fastq.bam.txt",
"./LC5b_S12_R1_001.fastq.bam.txt", "./LC5c_S19_R1_001.fastq.bam.txt",
"./LC5c_S19_R1_001.fastq.bam.txt", "./LC5c_S19_R1_001.fastq.bam.txt",
"./LC5c_S19_R1_001.fastq.bam.txt", "./LC5c_S19_R1_001.fastq.bam.txt",
"./LC5c_S19_R1_001.fastq.bam.txt", "./LC5c_S19_R1_001.fastq.bam.txt",
"./LC5c_S19_R1_001.fastq.bam.txt", "./LC5c_S19_R1_001.fastq.bam.txt",
"./LC5c_S19_R1_001.fastq.bam.txt", "./LC5c_S19_R1_001.fastq.bam.txt",
"./LC5d_S26_R1_001.fastq.bam.txt", "./LC5d_S26_R1_001.fastq.bam.txt",
"./LC5d_S26_R1_001.fastq.bam.txt", "./LC5d_S26_R1_001.fastq.bam.txt",
"./LC5d_S26_R1_001.fastq.bam.txt", "./LC5d_S26_R1_001.fastq.bam.txt",
"./LC5d_S26_R1_001.fastq.bam.txt", "./LC5d_S26_R1_001.fastq.bam.txt",
"./LC5d_S26_R1_001.fastq.bam.txt", "./LC5d_S26_R1_001.fastq.bam.txt",
"./LC5d_S26_R1_001.fastq.bam.txt", "./LC6a_S6_R1_001.fastq.bam.txt",
"./LC6a_S6_R1_001.fastq.bam.txt", "./LC6a_S6_R1_001.fastq.bam.txt",
"./LC6a_S6_R1_001.fastq.bam.txt", "./LC6a_S6_R1_001.fastq.bam.txt",
"./LC6a_S6_R1_001.fastq.bam.txt", "./LC6a_S6_R1_001.fastq.bam.txt",
"./LC6a_S6_R1_001.fastq.bam.txt", "./LC6a_S6_R1_001.fastq.bam.txt",
"./LC6a_S6_R1_001.fastq.bam.txt", "./LC6a_S6_R1_001.fastq.bam.txt",
"./LC6b_S13_R1_001.fastq.bam.txt", "./LC6b_S13_R1_001.fastq.bam.txt",
"./LC6b_S13_R1_001.fastq.bam.txt", "./LC6b_S13_R1_001.fastq.bam.txt",
"./LC6b_S13_R1_001.fastq.bam.txt", "./LC6b_S13_R1_001.fastq.bam.txt",
"./LC6b_S13_R1_001.fastq.bam.txt", "./LC6b_S13_R1_001.fastq.bam.txt",
"./LC6b_S13_R1_001.fastq.bam.txt", "./LC6b_S13_R1_001.fastq.bam.txt",
"./LC6b_S13_R1_001.fastq.bam.txt", "./LC6c_S20_R1_001.fastq.bam.txt",
"./LC6c_S20_R1_001.fastq.bam.txt", "./LC6c_S20_R1_001.fastq.bam.txt",
"./LC6c_S20_R1_001.fastq.bam.txt", "./LC6c_S20_R1_001.fastq.bam.txt",
"./LC6c_S20_R1_001.fastq.bam.txt", "./LC6c_S20_R1_001.fastq.bam.txt",
"./LC6c_S20_R1_001.fastq.bam.txt", "./LC6c_S20_R1_001.fastq.bam.txt",
"./LC6c_S20_R1_001.fastq.bam.txt", "./LC6c_S20_R1_001.fastq.bam.txt",
"./LC6d_S27_R1_001.fastq.bam.txt", "./LC6d_S27_R1_001.fastq.bam.txt",
"./LC6d_S27_R1_001.fastq.bam.txt", "./LC6d_S27_R1_001.fastq.bam.txt",
"./LC6d_S27_R1_001.fastq.bam.txt", "./LC6d_S27_R1_001.fastq.bam.txt",
"./LC6d_S27_R1_001.fastq.bam.txt", "./LC6d_S27_R1_001.fastq.bam.txt",
"./LC6d_S27_R1_001.fastq.bam.txt", "./LC6d_S27_R1_001.fastq.bam.txt",
"./LC6d_S27_R1_001.fastq.bam.txt", "./LC7a_S7_R1_001.fastq.bam.txt",
"./LC7a_S7_R1_001.fastq.bam.txt", "./LC7a_S7_R1_001.fastq.bam.txt",
"./LC7a_S7_R1_001.fastq.bam.txt", "./LC7a_S7_R1_001.fastq.bam.txt",
"./LC7a_S7_R1_001.fastq.bam.txt", "./LC7a_S7_R1_001.fastq.bam.txt",
"./LC7a_S7_R1_001.fastq.bam.txt", "./LC7a_S7_R1_001.fastq.bam.txt",
"./LC7a_S7_R1_001.fastq.bam.txt", "./LC7a_S7_R1_001.fastq.bam.txt",
"./LC7b_S14_R1_001.fastq.bam.txt", "./LC7b_S14_R1_001.fastq.bam.txt",
"./LC7b_S14_R1_001.fastq.bam.txt", "./LC7b_S14_R1_001.fastq.bam.txt",
"./LC7b_S14_R1_001.fastq.bam.txt", "./LC7b_S14_R1_001.fastq.bam.txt",
"./LC7b_S14_R1_001.fastq.bam.txt", "./LC7b_S14_R1_001.fastq.bam.txt",
"./LC7b_S14_R1_001.fastq.bam.txt", "./LC7b_S14_R1_001.fastq.bam.txt",
"./LC7b_S14_R1_001.fastq.bam.txt", "./LC7c_S21_R1_001.fastq.bam.txt",
"./LC7c_S21_R1_001.fastq.bam.txt", "./LC7c_S21_R1_001.fastq.bam.txt",
"./LC7c_S21_R1_001.fastq.bam.txt", "./LC7c_S21_R1_001.fastq.bam.txt",
"./LC7c_S21_R1_001.fastq.bam.txt", "./LC7c_S21_R1_001.fastq.bam.txt",
"./LC7c_S21_R1_001.fastq.bam.txt", "./LC7c_S21_R1_001.fastq.bam.txt",
"./LC7c_S21_R1_001.fastq.bam.txt", "./LC7c_S21_R1_001.fastq.bam.txt",
"./LC7d_S28_R1_001.fastq.bam.txt", "./LC7d_S28_R1_001.fastq.bam.txt",
"./LC7d_S28_R1_001.fastq.bam.txt", "./LC7d_S28_R1_001.fastq.bam.txt",
"./LC7d_S28_R1_001.fastq.bam.txt", "./LC7d_S28_R1_001.fastq.bam.txt",
"./LC7d_S28_R1_001.fastq.bam.txt", "./LC7d_S28_R1_001.fastq.bam.txt",
"./LC7d_S28_R1_001.fastq.bam.txt", "./LC7d_S28_R1_001.fastq.bam.txt",
"./LC7d_S28_R1_001.fastq.bam.txt"), V1 = c(165654L, 536619L,
886914L, 592837L, 457213L, 2462004L, 1278237L, 100659L, 72829L,
11249L, 4136L, 80318L, 247149L, 401957L, 261957L, 286761L, 2091422L,
1108388L, 93913L, 65827L, 11150L, 2502L, 318174L, 1061462L, 1811485L,
1210305L, 878620L, 3939288L, 2351546L, 158225L, 117326L, 14675L,
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2470810L, 189887L, 146039L, 11968L, 3516L, 89984L, 301412L, 547835L,
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88606L, 291013L, 517119L, 345786L, 369304L, 1990210L, 1134278L,
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30579L, 2861L, 1804L, 76274L, 132644L, 187678L, 138699L, 139575L,
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132726L, 99503L, 107553L, 594492L, 242656L, 48798L, 26411L, 19841L,
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387146L, 82824L, 44857L, 34610L, 24212L, 80653L, 151280L, 214130L,
152949L, 152028L, 732668L, 326087L, 56925L, 30604L, 22940L, 15337L,
65624L, 63506L, 63012L, 62432L, 94537L, 542501L, 199773L, 50390L,
33319L, 28780L, 21440L, 30931L, 30599L, 33469L, 32154L, 61837L,
423866L, 153656L, 29227L, 17812L, 15582L, 9882L, 72330L, 68392L,
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24303L, 30132L, 28149L, 28421L, 30218L, 64633L, 434753L, 156972L,
32262L, 19623L, 17882L, 10215L, 60948L, 51679L, 53546L, 52003L,
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Есть предложения, как продолжить получать желаемый результат? Спасибо !