вот 2 решения вашей проблемы
1) с холстом
var myRectangle = new System.Windows.Shapes.Rectangle();
var mainCanvas = new Canvas();
mainGrid.Children.Add(mainCanvas);
mainCanvas.Children.Add(myRectangle);
Canvas.SetLeft(myRectangle, 50);
Canvas.SetTop(myRectangle, 50);
myRectangle.Height = 100;
myRectangle.Width = 100;
myRectangle.Stroke = System.Windows.Media.Brushes.LightSteelBlue;
2) только с вашей сеткой
var myRectangle = new System.Windows.Shapes.Rectangle();
mainGrid.Children.Add(myRectangle);
myRectangle.Margin = new Thickness(50, 50, 0, 0);
myRectangle.HorizontalAlignment = HorizontalAlignment.Left;
myRectangle.VerticalAlignment = VerticalAlignment.Top;
myRectangle.Height = 100;
myRectangle.Width = 100;
myRectangle.Stroke = System.Windows.Media.Brushes.LightSteelBlue;