Ну, я понял, как это сделать.
onDrawFrame(GL10 gl) {
...
int[] crop = new int[4];
crop[0] = tileWidth * tileIndex; // tileIndex represents the nth tile in the texture atlas
crop[1] = tileHeight;
crop[2] = tileWidth;
crop[3] = -tileHeight;
// specify the source rectangle
((GL11) gl).glTexParameteriv(GL10.GL_TEXTURE_2D, GL11Ext.GL_TEXTURE_CROP_RECT_OES, crop, 0);
// draw the texture
((GL11Ext)gl).glDrawTexiOES(x, y, 0, tileWidth, tileHeight);
...
}