Пользовательская метрика: Использование калькулятора AucRoc для scikit learn с tf.keras - PullRequest
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Пользовательская метрика: Использование калькулятора AucRoc для scikit learn с tf.keras

1 голос
/ 12 июня 2019

Я тренирую многолинейный классификатор, используя tf.keras и horovod, который имеет 14 классов. AucRoc используется в качестве метрики для оценки производительности классификатора. Я хочу использовать калькулятор AucRoc Scikit Learn, как упомянуто здесь: Как вычислить Receiving Operating Characteristic (ROC) и AUC в кератах? . Если я подаю тензоры, как для следующей функции: 

def sci_auc_roc(y_true, y_pred):
    return tf.py_func(roc_auc_score(y_true, y_pred), tf.double)

Я получаю ошибку, которая выглядит следующим образом: 

/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/keras_applications/resnet50.py:265: UserWarning: The output shape of `ResNet50(include_top=False)` has been changed since Keras 2.2.0.
  warnings.warn('The output shape of `ResNet50(include_top=False)` '
Traceback (most recent call last):
  File "official_resnet_tf_1.12.0_auc.py", line 531, in <module>
    main()
  File "official_resnet_tf_1.12.0_auc.py", line 420, in main
    model = chexnet_model(FLAGS)
  File "official_resnet_tf_1.12.0_auc.py", line 375, in chexnet_model
    metrics=[tf_auc_roc,sci_auc_roc])
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/training/checkpointable/base.py", line 474, in _method_wrapper
    method(self, *args, **kwargs)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/training.py", line 648, in compile
    sample_weights=self.sample_weights)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/training.py", line 313, in _handle_metrics
    output, output_mask))
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/training.py", line 270, in _handle_per_output_metrics
    y_true, y_pred, weights=weights, mask=mask)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/training_utils.py", line 598, in weighted
    score_array = fn(y_true, y_pred)
  File "official_resnet_tf_1.12.0_auc.py", line 327, in sci_auc_roc
    return tf.py_func(roc_auc_score(y_true, y_pred), tf.double)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/sklearn/metrics/ranking.py", line 349, in roc_auc_score
    y_type = type_of_target(y_true)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/sklearn/utils/multiclass.py", line 243, in type_of_target
    'got %r' % y)
ValueError: Expected array-like (array or non-string sequence), got <tf.Tensor 'dense_target:0' shape=(?, ?) dtype=float32>

Я пытаюсь преобразовать tf-тензоры в массив numpy, а затем передать их в метод roc_auc_score следующим образом: 

def sci_auc_roc(y_true, y_pred):
    with tf.Session() as sess:
        y_true, y_pred = sess.run([y_true, y_pred])
    return tf.py_func(roc_auc_score(y_true, y_pred), tf.double)

Я получаю следующую ошибку: 

 warnings.warn('The output shape of `ResNet50(include_top=False)` '
Traceback (most recent call last):
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1334, in _do_call
    return fn(*args)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1319, in _run_fn
    options, feed_dict, fetch_list, target_list, run_metadata)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1407, in _call_tf_sessionrun
    run_metadata)
tensorflow.python.framework.errors_impl.InvalidArgumentError: You must feed a value for placeholder tensor 'input_1' with dtype float and shape [?,256,256,3]
         [[{{node input_1}} = Placeholder[dtype=DT_FLOAT, shape=[?,256,256,3], _device="/job:localhost/replica:0/task:0/device:GPU:0"]()]]
         [[{{node dense_target/_5}} = _Recv[client_terminated=false, recv_device="/job:localhost/replica:0/task:0/device:CPU:0", send_device="/job:localhost/replica:0/task:0/device:GPU:0", send_device_incarnation=1, tensor_name="edge_2237_dense_target", tensor_type=DT_FLOAT, _device="/job:localhost/replica:0/task:0/device:CPU:0"]()]]

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "official_resnet_tf_1.12.0_auc.py", line 531, in <module>
    main()
  File "official_resnet_tf_1.12.0_auc.py", line 420, in main
    model = chexnet_model(FLAGS)
  File "official_resnet_tf_1.12.0_auc.py", line 375, in chexnet_model
    metrics=[tf_auc_roc,sci_auc_roc])
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/training/checkpointable/base.py", line 474, in _method_wrapper
    method(self, *args, **kwargs)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/training.py", line 648, in compile
    sample_weights=self.sample_weights)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/training.py", line 313, in _handle_metrics
    output, output_mask))
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/training.py", line 270, in _handle_per_output_metrics
    y_true, y_pred, weights=weights, mask=mask)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/training_utils.py", line 598, in weighted
    score_array = fn(y_true, y_pred)
  File "official_resnet_tf_1.12.0_auc.py", line 324, in sci_auc_roc
    y_true, y_pred = sess.run([y_true, y_pred])
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 929, in run
    run_metadata_ptr)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1152, in _run
    feed_dict_tensor, options, run_metadata)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1328, in _do_run
    run_metadata)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1348, in _do_call
    raise type(e)(node_def, op, message)
tensorflow.python.framework.errors_impl.InvalidArgumentError: You must feed a value for placeholder tensor 'input_1' with dtype float and shape [?,256,256,3]
         [[node input_1 (defined at /mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/keras_applications/resnet50.py:214)  = Placeholder[dtype=DT_FLOAT, shape=[?,256,256,3], _device="/job:localhost/replica:0/task:0/device:GPU:0"]()]]
         [[{{node dense_target/_5}} = _Recv[client_terminated=false, recv_device="/job:localhost/replica:0/task:0/device:CPU:0", send_device="/job:localhost/replica:0/task:0/device:GPU:0", send_device_incarnation=1, tensor_name="edge_2237_dense_target", tensor_type=DT_FLOAT, _device="/job:localhost/replica:0/task:0/device:CPU:0"]()]]

Caused by op 'input_1', defined at:
  File "official_resnet_tf_1.12.0_auc.py", line 531, in <module>
    main()
  File "official_resnet_tf_1.12.0_auc.py", line 420, in main
    model = chexnet_model(FLAGS)
  File "official_resnet_tf_1.12.0_auc.py", line 339, in chexnet_model
    input_shape=(FLAGS.image_size, FLAGS.image_size, 3))
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/applications/__init__.py", line 70, in wrapper
    return base_fun(*args, **kwargs)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/applications/resnet50.py", line 32, in ResNet50
    return resnet50.ResNet50(*args, **kwargs)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/keras_applications/resnet50.py", line 214, in ResNet50
    img_input = layers.Input(shape=input_shape)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/input_layer.py", line 229, in Input
    input_tensor=tensor)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/keras/engine/input_layer.py", line 112, in __init__
    name=self.name)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/ops/array_ops.py", line 1747, in placeholder
    return gen_array_ops.placeholder(dtype=dtype, shape=shape, name=name)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/ops/gen_array_ops.py", line 5206, in placeholder
    "Placeholder", dtype=dtype, shape=shape, name=name)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/framework/op_def_library.py", line 787, in _apply_op_helper
    op_def=op_def)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/util/deprecation.py", line 488, in new_func
    return func(*args, **kwargs)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 3274, in create_op
    op_def=op_def)
  File "/mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 1770, in __init__
    self._traceback = tf_stack.extract_stack()

InvalidArgumentError (see above for traceback): You must feed a value for placeholder tensor 'input_1' with dtype float and shape [?,256,256,3]
         [[node input_1 (defined at /mnt/lustrefs/rakvee/miniconda3/envs/docker_pip2/lib/python3.6/site-packages/keras_applications/resnet50.py:214)  = Placeholder[dtype=DT_FLOAT, shape=[?,256,256,3], _device="/job:localhost/replica:0/task:0/device:GPU:0"]()]]
         [[{{node dense_target/_5}} = _Recv[client_terminated=false, recv_device="/job:localhost/replica:0/task:0/device:CPU:0", send_device="/job:localhost/replica:0/task:0/device:GPU:0", send_device_incarnation=1, tensor_name="edge_2237_dense_target", tensor_type=DT_FLOAT, _device="/job:localhost/replica:0/task:0/device:CPU:0"]()]]

--------------------------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:

  Process name: [[52342,1],0]
  Exit code:    1
--------------------------------------------------------------------------

Я также пробовал тензорный поток https://www.tensorflow.org/api_docs/python/tf/metrics/auc примерно так: 

def tf_auc_roc(y_true, y_pred):
    auc = tf.metrics.auc(y_true, y_pred)[1]
    K.get_session().run(tf.local_variables_initializer())
    return auc

Работает просто отлично. Тем не менее, это дает мне один номер для aucroc. Интересно, что представляет это число, является ли оно средним значением aucroc для всех 14 классов? или максимальные оценки всех классов? или как доходит до одного номера? 

1216/1216 [==============================] - 413s 340ms/step - loss: 0.1513 - tf_auc_roc: 0.7944 - val_loss: 0.2212 - val_tf_auc_roc: 0.8074
Epoch 2/15
 582/1216 [=============>................] - ETA: 3:16 - loss: 0.1459 - tf_auc_roc: 0.8053

1) Как исправить ошибку с roc_auc_score?

2) Что представляет собой это единственное число?

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