Ant не смог создать задачу или набрать apt - PullRequest
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Ant не смог создать задачу или набрать apt

0 голосов
/ 28 января 2019

Команда 

ant

Я пытаюсь запустить задачу ant на локальном компьютере, но получаю сообщение об ошибке, показанное ниже, когда запускаю команду ant (build.xmlнаходится в том же каталоге / home / lushen / batman)

Сообщение об ошибке: 

Buildfile: /home/lushen/batman/build.xml

init:
     [echo] Building batman-0.1

prepare:

prepare-java:

compile-java:

BUILD FAILED
/home/lushen/batman/build.xml:102: Problem: failed to create task or type apt
Cause: The name is undefined.
Action: Check the spelling.
Action: Check that any custom tasks/types have been declared.
Action: Check that any <presetdef>/<macrodef> declarations have taken place.


Total time: 0 seconds

Файл build.xml находится в каталоге / home / lushen /Сценарий batman и build.xml показан ниже:

файл build.xml 

  <project name="batman" default="all" basedir=".">
  <property environment="env" />

  <target name="all" depends="package-java" />

  <!-- Checks environment and setup variables -->
  <target name="init" description="Checks environment and setup variables">
    <tstamp />
    <property name="version" value="0.1" />

    <property name="build.compiler" value="modern" />

    <property name="bin.dir" value="./bin" />
    <property name="lib.dir" value="./lib" />
    <property name="src.main.dir" value="./src" />
    <property name="manifest.dir" value="./manifest" />
    <property name="resources.dir" value="./resources" />

    <property name="classpath" value="${lib.dir}/biojava.jar:${lib.dir}/bytecode.jar:${lib.dir}/bjv2-core-0.1.jar:${lib.dir}/stax-api-1.0.1.jar:${lib.dir}/colt.jar" />

    <!-- Main build directory -->
    <property name="build.dir" value="./ant-build" />
    <property name="build.classes.dir" value="${build.dir}/classes" />

    <!-- Javac properties -->
    <property name="javac.depend" value="false" />
    <property name="javac.debug" value="true" />
    <property name="javac.deprecation" value="false" />
    <property name="javac.source" value="1.5" />

    <!-- Javadoc properties -->
    <property name="build.dest.docs" value="${build.dir}/docs" />
    <property name="build.dest.doccheck" value="${build.dir}/docs/check" />
    <property name="packages" value="net.*" />

    <!-- Subdirectories for main source and classes -->
    <property name="name.main" value="batman" />
    <property name="Name.main" value="Batman" />
    <property name="build.dest.main" value="${build.classes.dir}/${name.main}" />
    <property name="build.docs.main" value="${build.dest.docs}/${name.main}" />
    <property name="jar.main" value="${lib.dir}/${name.main}.jar" />
    <property name="manifest.file.main" value="${manifest.dir}/${name.main}.txt" />

    <!-- Echo information -->
    <echo message="Building ${name.main}-${version}" />
  </target>


  <!--
    Prepare each part of the project.
    Each preparation creates working directories and copies files over.
  -->

  <!-- Prepares the basic stuff -->
  <target name="prepare" depends="init" description="creates basic directories">
    <!-- Creates directories -->
    <mkdir dir="${build.dir}" />
    <mkdir dir="${bin.dir}" />
  </target>

  <!-- Prepares the source code -->
  <target name="prepare-java" depends="prepare" description="Prepares java source files">
    <!-- Creates directories -->
    <mkdir dir="${build.dest.main}" />
    <mkdir dir="${build.docs.main}" />
  </target>

  <!-- Prepares the javadocs -->
  <target name="prepare-javadocs" depends="prepare" description="Prepares the javadocs">
    <!-- Creates directories -->
    <mkdir dir="${build.dest.docs}" />
  </target>


  <!-- Compiles the source directory -->
  <target name="compile-java" depends="prepare-java" description="Compiles the java source code">
    <apt
      destdir="${build.dest.main}"
      depend="${javac.depend}"
      deprecation="${javac.deprecation}"
      debug="${javac.debug}"
      srcdir="${src.main.dir}">
      <classpath>
        <pathelement path="${classpath}" />
    <pathelement path="${build.dest.build}" />
      </classpath>

      <filename name="batman/**/*.java" />
    </apt>
  </target>

Кроме того, я создал муравей и отредактировал файл ant.shфайл в каталоге /etc/profile.d, как показано ниже.

ant.sh file 

export ANT_HOME=/usr/local/ant
export PATH=${ANT_HOME}/bin:${PATH}

Я никогда не использовал Java, поэтому мои вопросы могут быть глупыми,Я прочитал подобные вопросы на форуме, но ни один из них не мог решить мою проблему.Я использую Ubuntu, Apache Ant (TM) версии 1.10.5, скомпилированную 10 июля 2018 года, и версию openjdk "10.0.2" 2018-07-17. Изменение Java и ant в более старой версии не помогло решить проблему.BioJava был установлен.

Я также пытался заменить все «apt» на «javac» в build.xml, но на этот раз я получаю следующее сообщение об ошибке:

Новое сообщение об ошибке, если заменить 'apt' на 'javac' в build.xml 

Buildfile: /home/lushen/batman/build.xml

init:
     [echo] Building batman-0.1

prepare:

prepare-java:

compile-java:
    [javac] Compiling 55 source files to /home/lushen/batman/ant-build/classes/batman
    [javac] /home/lushen/batman/src/batman/AddExpt.java:6: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/AddExpt.java:7: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/AddExpt.java:8: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/AddExpt.java:10: error: cannot find symbol
    [javac] @App(overview="Add experiment metadata to a Batman DB", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/Calibrate.java:16: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFDocumentHandler;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:17: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFParser;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:18: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFRecord;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:19: error: package org.biojava.bio.seq does not exist
    [javac] import org.biojava.bio.seq.DNATools;
    [javac]                           ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:20: error: package org.biojava.bio.seq does not exist
    [javac] import org.biojava.bio.seq.Sequence;
    [javac]                           ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:21: error: package org.biojava.bio.symbol does not exist
    [javac] import org.biojava.bio.symbol.Location;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:22: error: package org.biojava.bio.symbol does not exist
    [javac] import org.biojava.bio.symbol.LocationTools;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:23: error: package org.biojava.bio.symbol does not exist
    [javac] import org.biojava.bio.symbol.RangeLocation;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:24: error: package org.biojava.bio.symbol does not exist
    [javac] import org.biojava.bio.symbol.SimpleSymbolList;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:25: error: package org.biojava.bio.symbol does not exist
    [javac] import org.biojava.bio.symbol.Symbol;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:26: error: package org.biojava.bio.symbol does not exist
    [javac] import org.biojava.bio.symbol.SymbolList;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:27: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:28: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:29: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/Calibrate.java:37: error: cannot find symbol
    [javac] @App(overview="Perform per-array calibration of the Batman model", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/Calibrate.java:56: error: cannot find symbol
    [javac]     private Map<String,Location> mask = null;
    [javac]                        ^
    [javac]   symbol:   class Location
    [javac]   location: class Calibrate
    [javac] /home/lushen/batman/src/batman/Calibrate.java:170: error: cannot find symbol
    [javac]     private double tm(SymbolList sl)
    [javac]                       ^
    [javac]   symbol:   class SymbolList
    [javac]   location: class Calibrate
    [javac] /home/lushen/batman/src/batman/Calibrate.java:186: error: cannot find symbol
    [javac]     private final Symbol C = DNATools.c();
    [javac]                   ^
    [javac]   symbol:   class Symbol
    [javac]   location: class Calibrate
    [javac] /home/lushen/batman/src/batman/Calibrate.java:187: error: cannot find symbol
    [javac]     private final Symbol G = DNATools.g();
    [javac]                   ^
    [javac]   symbol:   class Symbol
    [javac]   location: class Calibrate
    [javac] /home/lushen/batman/src/batman/DmrT.java:12: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFDocumentHandler;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/DmrT.java:13: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFParser;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/DmrT.java:14: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFRecord;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/DmrT.java:15: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFWriter;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/DmrT.java:16: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.SimpleGFFRecord;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/DmrT.java:17: error: package org.bjv2.util does not exist
    [javac] import org.bjv2.util.SmallMap;
    [javac]                     ^
    [javac] /home/lushen/batman/src/batman/DmrT.java:18: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/DmrT.java:19: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/DmrT.java:21: error: cannot find symbol
    [javac] @App(overview="...", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/DmrT.java:146: error: cannot find symbol
    [javac]     private Map<String,GFFRecord> loadGFF(String fileName)
    [javac]                        ^
    [javac]   symbol:   class GFFRecord
    [javac]   location: class DmrT
    [javac] /home/lushen/batman/src/batman/DumpMedipGFF.java:9: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/DumpMedipGFF.java:10: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/DumpMedipGFF.java:11: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/DumpMedipGFF.java:13: error: cannot find symbol
    [javac] @App(overview="Re-export MeDIP data from a Batman DB", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/DumpMedipGFF2.java:9: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/DumpMedipGFF2.java:10: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/DumpMedipGFF2.java:11: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/DumpMedipGFF2.java:13: error: cannot find symbol
    [javac] @App(overview="Re-export MeDIP data from a Batman DB", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/EstimateCouplingProfile.java:5: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/EstimateCouplingProfile.java:6: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/EstimateCouplingProfile.java:8: error: cannot find symbol
    [javac] @App(overview="Probe-coupling simulation", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/FitBeta.java:11: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/FitBeta.java:16: error: package cern.jet.stat does not exist
    [javac] import cern.jet.stat.Gamma;
    [javac]                     ^
    [javac] /home/lushen/batman/src/batman/FitBeta.java:18: error: cannot find symbol
    [javac] @App(overview="MCMC fit of a Beta distribution to some data", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/LoadCouplingProfile.java:8: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadCouplingProfile.java:9: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadCouplingProfile.java:10: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadCouplingProfile.java:14: error: cannot find symbol
    [javac] @App(overview="Load a coupling profile into a Batman DB", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:10: error: package org.biojava.bio does not exist
    [javac] import org.biojava.bio.Annotation;
    [javac]                       ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:11: error: package org.biojava.bio.seq does not exist
    [javac] import org.biojava.bio.seq.DNATools;
    [javac]                           ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:12: error: package org.biojava.bio.seq does not exist
    [javac] import org.biojava.bio.seq.Sequence;
    [javac]                           ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:13: error: package org.biojava.bio.seq does not exist
    [javac] import org.biojava.bio.seq.SequenceIterator;
    [javac]                           ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:14: error: package org.biojava.bio.seq.db does not exist
    [javac] import org.biojava.bio.seq.db.HashSequenceDB;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:15: error: package org.biojava.bio.seq.db does not exist
    [javac] import org.biojava.bio.seq.db.SequenceDB;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:16: error: package org.biojava.bio.seq.impl does not exist
    [javac] import org.biojava.bio.seq.impl.SimpleSequence;
    [javac]                                ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:17: error: package org.biojava.bio.seq.io does not exist
    [javac] import org.biojava.bio.seq.io.SeqIOTools;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:18: error: package org.biojava.bio.symbol does not exist
    [javac] import org.biojava.bio.symbol.Symbol;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:19: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:20: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:21: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:25: error: cannot find symbol
    [javac] @App(overview="Load genomic sequence into a Batman DB", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/LoadGenomeTiles.java:31: error: cannot find symbol
    [javac]     private SequenceDB seqdb;
    [javac]             ^
    [javac]   symbol:   class SequenceDB
    [javac]   location: class LoadGenomeTiles
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:10: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFDocumentHandler;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:11: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFParser;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:12: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFRecord;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:13: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:14: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:15: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:19: error: cannot find symbol
    [javac] @App(overview="Load probe and ROI data into a Batman database", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:105: error: cannot find symbol
    [javac]     private String gaga(GFFRecord r, String key)
    [javac]                         ^
    [javac]   symbol:   class GFFRecord
    [javac]   location: class LoadProbes
    [javac] /home/lushen/batman/src/batman/LoadProbes.java:110: error: cannot find symbol
    [javac]     private String gaga2(GFFRecord r, String key1, String key2)
    [javac]                          ^
    [javac]   symbol:   class GFFRecord
    [javac]   location: class LoadProbes
    [javac] /home/lushen/batman/src/batman/LoadRatsGFF.java:8: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFDocumentHandler;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/LoadRatsGFF.java:9: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFParser;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/LoadRatsGFF.java:10: error: package org.biojava.bio.program.gff does not exist
    [javac] import org.biojava.bio.program.gff.GFFRecord;
    [javac]                                   ^
    [javac] /home/lushen/batman/src/batman/LoadRatsGFF.java:11: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadRatsGFF.java:12: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadRatsGFF.java:13: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/LoadRatsGFF.java:17: error: cannot find symbol
    [javac] @App(overview="Load almost-Nimblegen-style GFF log-ratio data into Batman DB", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/LoadRatsGFF.java:128: error: cannot find symbol
    [javac]     private String gaga(GFFRecord r, String key)
    [javac]                         ^
    [javac]   symbol:   class GFFRecord
    [javac]   location: class LoadRatsGFF
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:15: error: package org.biojava.bio does not exist
    [javac] import org.biojava.bio.Annotation;
    [javac]                       ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:16: error: package org.biojava.bio.seq does not exist
    [javac] import org.biojava.bio.seq.DNATools;
    [javac]                           ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:17: error: package org.biojava.bio.seq does not exist
    [javac] import org.biojava.bio.seq.Sequence;
    [javac]                           ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:18: error: package org.biojava.bio.seq does not exist
    [javac] import org.biojava.bio.seq.SequenceIterator;
    [javac]                           ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:19: error: package org.biojava.bio.seq.db does not exist
    [javac] import org.biojava.bio.seq.db.HashSequenceDB;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:20: error: package org.biojava.bio.seq.db does not exist
    [javac] import org.biojava.bio.seq.db.SequenceDB;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:21: error: package org.biojava.bio.seq.impl does not exist
    [javac] import org.biojava.bio.seq.impl.SimpleSequence;
    [javac]                                ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:22: error: package org.biojava.bio.seq.io does not exist
    [javac] import org.biojava.bio.seq.io.SeqIOTools;
    [javac]                              ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:23: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:24: error: package org.biojava.utils.xml does not exist
    [javac] import org.biojava.utils.xml.PrettyXMLWriter;
    [javac]                             ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:25: error: package org.biojava.utils.xml does not exist
    [javac] import org.biojava.utils.xml.XMLWriter;
    [javac]                             ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:26: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.App;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:27: error: package org.bjv2.util.cli does not exist
    [javac] import org.bjv2.util.cli.Option;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:38: error: package cern.colt.list does not exist
    [javac] import cern.colt.list.DoubleArrayList;
    [javac]                      ^
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:40: error: cannot find symbol
    [javac] @App(overview="Sample from Batman model for a group of probes", generateStub=true)
    [javac]  ^
    [javac]   symbol: class App
    [javac] /home/lushen/batman/src/batman/SampleMethStates.java:47: error: cannot find symbol
    [javac]     private SequenceDB seqdb;
    [javac]             ^
    [javac]   symbol:   class SequenceDB
    [javac]   location: class SampleMethStates
    [javac] /home/lushen/batman/src/batman/Summarize.java:19: error: package org.biojava.utils does not exist
    [javac] import org.biojava.utils.JDBCPooledDataSource;
    [javac]                         ^
    [javac] /home/lushen/batman/src/batman/Summarize.java:20: error: package org.bjv2.util does not exist
    [javac] import org.bjv2.util.SmallSet;
    [javac]                     ^
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 100 errors
    BUILD FAILED
/home/lushen/batman/build.xml:103: Compile failed; see the compiler error output for details.

Total time: 2 seconds

Похоже, я не установил кучу соответствующих пакетов.Но я понятия не имею, как их установить ..

Пожалуйста, помогите мне решить проблему "не удалось создать задачу или ввести apt", когда я запускаю ant.Я очень ценю вашу помощь!

1 Ответ

0 голосов
/ 28 января 2019

Проверка вашего env Я видел, что вы используете

openjdk версия "10.0.2" 2018-07-17.

И только функция apt для antработает для:

Эта задача выполняется от Java 1.5 до Java 1.7.

Apt устарела в Java 1.6, которая может запускать процессоры аннотаций как часть javac и удаляется из дистрибутива.в Java 1.8.Задача вызовет исключительную ситуацию при попытке запуска под Java 1.8.

Из Документация по Ant

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