Я пытался установить пакет R 'randomForest', для этого я выполнил обычную команду установки
install.packages("randomForest", dependencies = T)
Это выдает мне следующую ошибку, которую у меня возникли проблемы при интерпретации. Мне кажется, что-то отсутствует в папке для другого пакета R, 'RccpEigen', и это вызывает ошибку, но я не уверен, и я не смог найти, как это исправить.
Полное сообщение об ошибке таково:
Installing package into ‘/home/scott/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/randomForest_4.6-14.tar.gz'
Content type 'application/x-gzip' length 80074 bytes (78 KB)
==================================================
downloaded 78 KB
* installing *source* package ‘randomForest’ ...
** package ‘randomForest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/home/scott/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include/" -I"/home/scott/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/" -I"/home/scott/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/unsupported" -I"/home/scott/R/x86_64-pc-linux-gnu-library/3.6/BH/include" -I"/home/scott/R/x86_64-pc-linux-gnu-library/3.6/StanHeaders/include/src/" -I"/home/scott/R/x86_64-pc-linux-gnu-library/3.6/StanHeaders/include/" -I"/home/scott/R/x86_64-pc-linux-gnu-library/3.6/rstan/include" -DEIGEN_NO_DEBUG -D_REENTRANT -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -include stan/math/prim/mat/fun/Eigen.hpp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-V28x5H/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c classTree.c -o classTree.o
In file included from /home/scott/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:88:0,
from /home/scott/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
from /home/scott/R/x86_64-pc-linux-gnu-library/3.6/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4,
from <command-line>:0:
/home/scott/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/util/Macros.h:613:1: error: unknown type name ‘namespace’
namespace Eigen {
^~~~~~~~~
/home/scott/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/util/Macros.h:613:17: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘{’ token
namespace Eigen {
^
In file included from /home/scott/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1:0,
from /home/scott/R/x86_64-pc-linux-gnu-library/3.6/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4,
from <command-line>:0:
/home/scott/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:96:10: fatal error: complex: No such file or directory
#include <complex>
^~~~~~~~~
compilation terminated.
/usr/lib/R/etc/Makeconf:168: recipe for target 'classTree.o' failed
make: *** [classTree.o] Error 1
ERROR: compilation failed for package ‘randomForest’
* removing ‘/home/scott/R/x86_64-pc-linux-gnu-library/3.6/randomForest’
Warning in install.packages :
installation of package ‘randomForest’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpbKxumd/downloaded_packages’
Вот моя информация о сеансе:
R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.4 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8
[5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8 LC_PAPER=en_CA.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RcppEigen_0.3.3.7.0 lme4_1.1-21 Matrix_1.2-18 ggplot2_3.3.0 Rmisc_1.5 plyr_1.8.6
[7] lattice_0.20-38 brms_2.12.0 Rcpp_1.0.4
loaded via a namespace (and not attached):
[1] nlme_3.1-144 matrixStats_0.56.0 xts_0.12-0 threejs_0.3.3 rstan_2.19.3 tools_3.6.3
[7] backports_1.1.6 R6_2.4.1 DT_0.13 colorspace_1.4-1 withr_2.1.2 tidyselect_1.0.0
[13] gridExtra_2.3 prettyunits_1.1.1 processx_3.4.2 Brobdingnag_1.2-6 curl_4.3 compiler_3.6.3
[19] cli_2.0.2 shinyjs_1.1 labeling_0.3 colourpicker_1.0 checkmate_2.0.0 scales_1.1.0
[25] dygraphs_1.1.1.6 mvtnorm_1.1-0 readr_1.3.1 ggridges_0.5.2 callr_3.4.3 stringr_1.4.0
[31] digest_0.6.25 StanHeaders_2.19.2 foreign_0.8-75 minqa_1.2.4 rio_0.5.16 base64enc_0.1-3
[37] pkgconfig_2.0.3 htmltools_0.4.0 fastmap_1.0.1 readxl_1.3.1 htmlwidgets_1.5.1 rlang_0.4.5
[43] rstudioapi_0.11 shiny_1.4.0.2 farver_2.0.3 zoo_1.8-7 crosstalk_1.1.0.1 gtools_3.8.2
[49] zip_2.0.4 dplyr_0.8.5 car_3.0-7 inline_0.3.15 magrittr_1.5 loo_2.2.0
[55] bayesplot_1.7.1 munsell_0.5.0 fansi_0.4.1 abind_1.4-5 lifecycle_0.2.0 stringi_1.4.6
[61] carData_3.0-3 MASS_7.3-51.5 pkgbuild_1.0.6 grid_3.6.3 parallel_3.6.3 promises_1.1.0
[67] forcats_0.4.0 crayon_1.3.4 miniUI_0.1.1.1 haven_2.2.0 splines_3.6.3 hms_0.5.3
[73] ps_1.3.2 pillar_1.4.3 igraph_1.2.5 boot_1.3-24 markdown_1.1 shinystan_2.5.0
[79] codetools_0.2-16 reshape2_1.4.3 stats4_3.6.3 rstantools_2.0.0 glue_1.4.0 data.table_1.12.8
[85] vctrs_0.2.4 nloptr_1.2.1 httpuv_1.5.2 cellranger_1.1.0 gtable_0.3.0 purrr_0.3.3
[91] assertthat_0.2.1 openxlsx_4.1.4 mime_0.9 xtable_1.8-4 coda_0.19-3 later_1.0.0
[97] rsconnect_0.8.16 tibble_3.0.0 shinythemes_1.1.2 ellipsis_0.3.0 bridgesampling_1.0-0
>
Любая помощь будет принята с благодарностью, так как я над головой здесь программирование мудро.