Я написал пакет, который зависит от scikit-umfpack, и только что обнаружил Python Poetry.
Я пытаюсь настроить файл .toml для поэзии для управления umfpack.
Когда набирая поэзию добавить, предлагается использовать scikit-umfpack версии 0.3.2, поэтому кажется, что поэзия знает об этом.
Однако, если я использую следующие зависимости в файле .toml:
[tool.poetry.dependencies]
python = "^3.6"
scipy = "^1.3.2"
matplotlib = "^3.1.0"
scikit-umfpack = "^0.3.2"
тогда я получаю следующий вывод после обновления поэзии:
(base) fbeaudoi@fbeaudoi-HP-Pavilion-x360-Convertible:~/Documents/Nanoacademic/Projets/FEM/Code/poissonfem$ poetry update
Updating dependencies
Resolving dependencies... (0.3s)
Package operations: 1 install, 0 updates, 0 removals
- Installing scikit-umfpack (0.3.2)
[EnvCommandError]
Command ['/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/bin/pip', 'install', '--no-deps', 'scikit-umfpack==0.3.2'] errored with the following return code 1, and output:
Collecting scikit-umfpack==0.3.2
Using cached scikit-umfpack-0.3.2.tar.gz (25 kB)
Installing collected packages: scikit-umfpack
Running setup.py install for scikit-umfpack: started
Running setup.py install for scikit-umfpack: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gefcllf0/scikit-umfpack/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gefcllf0/scikit-umfpack/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-epnbhqeo/install-record.txt --single-version-externally-managed --compile --install-headers /home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/include/site/python3.7/scikit-umfpack
cwd: /tmp/pip-install-gefcllf0/scikit-umfpack/
Complete output (96 lines):
umfpack_info:
customize UnixCCompiler
amd_info:
FOUND:
libraries = ['amd', 'amd']
library_dirs = ['/usr/lib/x86_64-linux-gnu']
include_dirs = ['/usr/include/suitesparse']
define_macros = [('SCIPY_AMD_H', None)]
swig_opts = ['-I/usr/include/suitesparse']
FOUND:
libraries = ['umfpack', 'amd', 'amd', 'umfpack']
library_dirs = ['/usr/lib/x86_64-linux-gnu']
include_dirs = ['/usr/include/suitesparse']
define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)]
swig_opts = ['-I/usr/include/suitesparse', '-I/usr/include/suitesparse']
blas_opt_info:
blas_mkl_info:
libraries mkl_rt not found in ['/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
blis_info:
libraries blis not found in ['/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
libraries openblas not found in ['/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas not found in ['/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_3_10_blas_info:
libraries satlas not found in ['/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in ['/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in ['/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
accelerate_info:
NOT AVAILABLE
/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/lib/python3.7/site-packages/numpy/distutils/system_info.py:1896: UserWarning:
Optimized (vendor) Blas libraries are not found.
Falls back to netlib Blas library which has worse performance.
A better performance should be easily gained by switching
Blas library.
if self._calc_info(blas):
blas_info:
C compiler: gcc -pthread -B /home/fbeaudoi/miniconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating /tmp/tmp23bo6woa/tmp
creating /tmp/tmp23bo6woa/tmp/tmp23bo6woa
compile options: '-I/usr/local/include -I/usr/include -I/usr/include/suitesparse -I/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/include -c'
gcc: /tmp/tmp23bo6woa/source.c
gcc -pthread -B /home/fbeaudoi/miniconda3/compiler_compat -Wl,--sysroot=/ /tmp/tmp23bo6woa/tmp/tmp23bo6woa/source.o -L/usr/lib -lblas -o /tmp/tmp23bo6woa/a.out
FOUND:
libraries = ['blas', 'blas']
library_dirs = ['/usr/lib']
include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse', '/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/include']
language = c
define_macros = [('HAVE_CBLAS', None)]
FOUND:
define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)]
libraries = ['blas', 'blas']
library_dirs = ['/usr/lib']
include_dirs = ['/usr/local/include', '/usr/include', '/usr/include/suitesparse', '/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/include']
language = c
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "scikits.umfpack.__umfpack" sources
creating build
creating build/src.linux-x86_64-3.7
creating build/src.linux-x86_64-3.7/scikits
creating build/src.linux-x86_64-3.7/scikits/umfpack
swig: scikits/umfpack/umfpack.i
swig -python -I/usr/include/suitesparse -I/usr/include/suitesparse -I/usr/include/suitesparse -I/usr/local/include -I/usr/include -I/home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/include -o build/src.linux-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c -outdir build/src.linux-x86_64-3.7/scikits/umfpack scikits/umfpack/umfpack.i
unable to execute 'swig': No such file or directory
error: command 'swig' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gefcllf0/scikit-umfpack/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gefcllf0/scikit-umfpack/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-epnbhqeo/install-record.txt --single-version-externally-managed --compile --install-headers /home/fbeaudoi/snap/code/common/.cache/pypoetry/virtualenvs/poissonfem-7VrrSdcJ-py3.7/include/site/python3.7/scikit-umfpack Check the logs for full command output.
Кто-нибудь успешно использовал scikit-umfpack с поэзией Python, и если да, то как?