используйте ejb-jar.xml вместо ibm-ejb-jar-bnd.xml
<message-driven>
<ejb-name>MessageDrivenBean1</ejb-name>
<ejb-class>com.sample.MessageDrivenBean</ejb-class>
<messaging-type>javax.jms.MessageListener</messaging-type>
<transaction-type>Container</transaction-type>
<activation-config>
<activation-config-property>
<activation-config-property-name>destinationType</activation-config-property-name>
<activation-config-property-value>javax.jms.Queue</activation-config-property-value>
</activation-config-property>
</activation-config>
</message-driven>
<message-driven>
<ejb-name>MessageDrivenBean2</ejb-name>
<ejb-class>com.sample.MessageDrivenBean</ejb-class>
<messaging-type>javax.jms.MessageListener</messaging-type>
<transaction-type>Container</transaction-type>
<activation-config>
<activation-config-property>
<activation-config-property-name>destinationType</activation-config-property-name>
<activation-config-property-value>javax.jms.Queue</activation-config-property-value>
</activation-config-property>
</activation-config>
</message-driven>
</enterprise-beans>
И удалите аннотацию @MessageDriven из вашего класса Java
'@MessageDriven(activationConfig = { @ActivationConfigProperty(propertyName = "destinationType", propertyValue = "javax.jms.Queue")
})'